PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG227600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 263aa MW: 30004.6 Da PI: 6.6014

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG227600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.4	7.5e-16	129	216	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleH 85 +fY++YA+++GF+ +k++++ + +r f+C++ gk e kk++ ++++ +++++t+C a++k+k ++ +++ e+++++l+H Pavir.2NG227600.2.p 129 EFYCTYAEKAGFEPKKANKSGN-------TRYFRCNRFGKGEYYKKDEAERKTGKTSKKTSCLAMIKLKFRRdeesnEKVAEIEQVRLDH 211 6**********999875555.......789***********888888999********9776554445667899999* PP FAR1 86 nHela 90 nH l Pavir.2NG227600.2.p 212 NHVLL 216 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-12	129	217	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MATRRLQFGE VGEQGDVPVR KEQEVIVEEA TRCNLGMQQD VSENQGIQGG VSNERRMNID 60 EGIHTPHASS MTEGEEGCSR NIITPPATVD PSDIQTPNPG HIYTHRDDMD EAWIPRVGRC 120 FKSEEEAHEF YCTYAEKAGF EPKKANKSGN TRYFRCNRFG KGEYYKKDEA ERKTGKTSKK 180 TSCLAMIKLK FRRDEESNEK VAEIEQVRLD HNHVLLPKPT ETKQMRAHKN KDPLLLDYVD 240 DLQANDVPNH CVRNIIREGQ RI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG227600.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J40882.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	3e-09	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Pavir.2NG227600.2.p