PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG231600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 152aa    MW: 16949.6 Da    PI: 12.5961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG231600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.3e-081071411255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          RR++iN++++ L++l+P++        +  ++L +A+eY+k+Lq
  Pavir.2NG231600.1.p 107 RRSKINKKMQALQSLIPNS--------N-KTMLDEAIEYLKQLQ 141
                          ******************8........2.378***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003535.8E-5102146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-7107145No hitNo description
PfamPF000104.3E-5107141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-9107149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-10107149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MRTPWLLPIS TTGGGGGGGG WRSRRRCGAR CSSGWRRSRR RRWCWATPNR RTTGRRQAGL  60
GTVTRACRSR NRRRRGSTGG PAANGAAPRR CITFTRRCCS LPFLEGRRSK INKKMQALQS  120
LIPNSNKTML DEAIEYLKQL QLQVQASKMS A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12341RRRCGARCSSGWRRSRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG231600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6NUL74e-28A0A1D6NUL7_MAIZE; Transcription factor SPATULA
STRINGPavir.Ba03063.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.11e-16bHLH family protein