PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG236100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 127aa    MW: 13582.5 Da    PI: 4.7014
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG236100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.11.2e-1436125788
                NF-YB   7 flPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                          +lP a v r++k  l   a         + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+
  Pavir.2NG236100.1.p  36 ELPKAIVRRLVKDKLAHVAgggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLRTSLQ 125
                          68888999999988865331111122158899999**************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.9E-2829125IPR009072Histone-fold
PfamPF008085.3E-1036108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.92E-2337125IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MPRKATKEAE PQAAAAAQDE PAPATAAKMA EVEVEELPKA IVRRLVKDKL AHVAGGGEGA  60
EVIVNKDAMA AFAESARIFI HYLSATANDM CKESKRQTIN ADDVLKALDE MEFSEFVEPL  120
RTSLQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG236100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605591e-110BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626971e-110EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640461e-110EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283011e-110KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801207.17e-63DNA polymerase epsilon subunit 3
TrEMBLA0A3L6QRV51e-64A0A3L6QRV5_PANMI; DNA polymerase epsilon subunit 3
STRINGPavir.Ba02818.1.p7e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-33nuclear factor Y, subunit B11