PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG262600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 1057aa MW: 113890 Da PI: 6.8857

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG262600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	909	927	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C++Cg++Fs ++L++H Pavir.2NG262600.1.p 909 YQCKICGERFSLEEELRSH 927 9****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	35.344	63	191	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	2.0E-42	65	192	IPR008942	ENTH/VHS
SMART	SM00582	1.4E-42	66	188	IPR006569	CID domain
SuperFamily	SSF48464	8.72E-38	66	184	IPR008942	ENTH/VHS
CDD	cd03562	1.55E-41	70	177	No hit	No description
Pfam	PF04818	1.4E-9	119	172	IPR006903	RNA polymerase II-binding domain
Gene3D	G3DSA:3.30.160.60	3.3E-4	905	928	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.473	909	937	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
MRASASAAPM EASASASARR SAPGPDPGAK KPRLAQPPPR DPRSSSYAAA SNGAAASAAE 60 QTLVDELLGQ YRTALGELTF NSKPIITNLT IIAGENLQAA KPIAALICAN ILEVPSEQKL 120 PSLYLLDSIV KNIGKDYVKH FSARLPEVFC KAYRQVDPSI HHSMRHLFGT WKGVFPPLPL 180 QTIEKELGFQ SSANGSSSAA PLRPDSQSPR PSNSIHVNPK YLERQQLNQS TKGILGSGAK 240 AAVIADAGDD VERPNRLGTD RSAGRRLDAP ITRPNIQRTQ RDPFSNPVNE KQAGRDVRGL 300 GFSSNSQQAV VGPGQVRSKP KGQDGIGGPY YATGVGSSEE QFDRRSNFYS SKDVQPSGSV 360 RLDSALLPTP SINSDRVGRP SSNKSWKHFE EEEYVWDDVH SQAADYGGNN TIRKGEWMAD 420 DGNAKFASLQ RAKWPEVGAV EHLDPNIHKL DSLPRFGLST GQDRRLAAYL DHEEYIHGKH 480 EVEPRIDREI RTDGQPFPPP RSSSLWVSQE KEHPDIGLDP RISRFSNQPG ERSMSVSITS 540 SVPVGLSGPY AGRSSLDIAN SVPTRSTETF GQQKHRYWSS SPPPAHSPSS IAPFARQSSP 600 NAAEPDFYPS RSFSQLGQNP QEEYSQRAAA FAKDSHFIAQ NARLTQGQPS LQAIQQAQKY 660 PTLQSKPHIK PTDQVQASFS RENSPSLLRP SIQLGEVSLP TDSTPISSDL TSASNLLAGL 720 IKSGFKPNNP GDLASLRAQP LVPSGPLPHT LPSPTVAASS LQNAAGENTI LQTQATNTAR 780 PPLPPGLPPP PSTQSAEKAA PLSSLLSSLV AKGLISTPAT DSSTAVPSQP NKSSVNATNV 840 TAAAMPLPAQ MPSVGKEASN SASSAPANIL LPKAVEIKAG DLIGLEFKPE KLRKYNEHVI 900 SSLFGDRNYQ CKICGERFSL EEELRSHTTC RGSRESETIY AGIAPKKWYP SKNSYIDGSN 960 EMEDSAEASD VDLSPGEVCE FMVPADESQI ICALCGEPFD DFYSIEKGDW MYKDTVFLDF 1020 PNGESSCGSN VEGKEQMPIV HVRCMPRGPN DGMEVD*

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

MRASASAAPM EASASASARR SAPGPDPGAK KPRLAQPPPR DPRSSSYAAA SNGAAASAAE  60
QTLVDELLGQ YRTALGELTF NSKPIITNLT IIAGENLQAA KPIAALICAN ILEVPSEQKL  120
PSLYLLDSIV KNIGKDYVKH FSARLPEVFC KAYRQVDPSI HHSMRHLFGT WKGVFPPLPL  180
QTIEKELGFQ SSANGSSSAA PLRPDSQSPR PSNSIHVNPK YLERQQLNQS TKGILGSGAK  240
AAVIADAGDD VERPNRLGTD RSAGRRLDAP ITRPNIQRTQ RDPFSNPVNE KQAGRDVRGL  300
GFSSNSQQAV VGPGQVRSKP KGQDGIGGPY YATGVGSSEE QFDRRSNFYS SKDVQPSGSV  360
RLDSALLPTP SINSDRVGRP SSNKSWKHFE EEEYVWDDVH SQAADYGGNN TIRKGEWMAD  420
DGNAKFASLQ RAKWPEVGAV EHLDPNIHKL DSLPRFGLST GQDRRLAAYL DHEEYIHGKH  480
EVEPRIDREI RTDGQPFPPP RSSSLWVSQE KEHPDIGLDP RISRFSNQPG ERSMSVSITS  540
SVPVGLSGPY AGRSSLDIAN SVPTRSTETF GQQKHRYWSS SPPPAHSPSS IAPFARQSSP  600
NAAEPDFYPS RSFSQLGQNP QEEYSQRAAA FAKDSHFIAQ NARLTQGQPS LQAIQQAQKY  660
PTLQSKPHIK PTDQVQASFS RENSPSLLRP SIQLGEVSLP TDSTPISSDL TSASNLLAGL  720
IKSGFKPNNP GDLASLRAQP LVPSGPLPHT LPSPTVAASS LQNAAGENTI LQTQATNTAR  780
PPLPPGLPPP PSTQSAEKAA PLSSLLSSLV AKGLISTPAT DSSTAVPSQP NKSSVNATNV  840
TAAAMPLPAQ MPSVGKEASN SASSAPANIL LPKAVEIKAG DLIGLEFKPE KLRKYNEHVI  900
SSLFGDRNYQ CKICGERFSL EEELRSHTTC RGSRESETIY AGIAPKKWYP SKNSYIDGSN  960
EMEDSAEASD VDLSPGEVCE FMVPADESQI ICALCGEPFD DFYSIEKGDW MYKDTVFLDF  1020
PNGESSCGSN VEGKEQMPIV HVRCMPRGPN DGMEVD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	2e-14	67	171	8	112	PCF11 protein
1sz9_B	2e-14	67	171	8	112	PCF11 protein
1sz9_C	2e-14	67	171	8	112	PCF11 protein
1sza_A	2e-14	67	171	8	112	PCF11 protein
1sza_B	2e-14	67	171	8	112	PCF11 protein
1sza_C	2e-14	67	171	8	112	PCF11 protein
2bf0_X	2e-14	67	171	13	117	PCF11
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.15915	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG262600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801398.1	0.0	uncharacterized protein LOC112880881
TrEMBL	A0A2T7EP41	0.0	A0A2T7EP41_9POAL; Uncharacterized protein
STRING	Pavir.Ba02617.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8

Link Out ? help Back to Top
Phytozome	Pavir.2NG262600.1.p