PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG271400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 227aa    MW: 24988.1 Da    PI: 5.292
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG271400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.11.4e-07930223
                         --SS-EEEEEEE--TT-SS-EE CS
                 WRKY  2 dDgynWrKYGqKevkgsefprs 23
                         +D y+ rKYGqKe+ g++fprs
  Pavir.2NG271400.1.p  9 QDSYTRRKYGQKEILGARFPRS 30
                         8********************9 PP
2WRKY39.41.2e-1244861859
                         -SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY 18 sefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         s   rsY+rC  + gCp++k+v++s+ dp+ +e tY   H+++
  Pavir.2NG271400.1.p 44 SWIQRSYFRCGRKpGCPARKHVQQSDADPSKLELTYFAAHTCD 86
                         6678*******999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.2E-23887IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-19888IPR003657WRKY domain
PROSITE profilePS5081115.4111088IPR003657WRKY domain
SuperFamilySSF1182903.53E-124188IPR003657WRKY domain
PfamPF031061.9E-124486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIVLQHGVQD SYTRRKYGQK EILGARFPRS HTPSRENSRG LQHSWIQRSY FRCGRKPGCP  60
ARKHVQQSDA DPSKLELTYF AAHTCDDPPP PSSSPHIVPC PVPISGTADV LLPVAAVPAA  120
PSSTQHDPVP DDTTFTPSMG AEQAELLFIP SPACSQSELL PAEIAKVERQ GPPVWMEYGV  180
EAEQDDEPVT ISDFVVPFFE QSGLREHDDE SAFFMVPKMY RSCSVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG271400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804239.19e-65probable WRKY transcription factor 54
TrEMBLA0A3L6T6H23e-86A0A3L6T6H2_PANMI; Uncharacterized protein
STRINGPavir.Ba02750.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-12WRKY DNA-binding protein 54