PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG271400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 208aa    MW: 22729.7 Da    PI: 4.669
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG271400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.23.4e-23967259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         +D y+ rKYGqKe+ g++fprsY+rC  + gCp++k+v++s+ dp+ +e tY   H+++
  Pavir.2NG271400.2.p  9 QDSYTRRKYGQKEILGARFPRSYFRCGRKpGCPARKHVQQSDADPSKLELTYFAAHTCD 67
                         8**************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.45E-20869IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-22869IPR003657WRKY domain
SMARTSM007748.8E-27868IPR003657WRKY domain
PfamPF031064.6E-211067IPR003657WRKY domain
PROSITE profilePS5081120.0481069IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MIVLQHGVQD SYTRRKYGQK EILGARFPRS YFRCGRKPGC PARKHVQQSD ADPSKLELTY  60
FAAHTCDDPP PPSSSPHIVP CPVPISGTAD VLLPVAAVPA APSSTQHDPV PDDTTFTPSM  120
GAEQAELLFI PSPACSQSEL LPAEIAKVER QGPPVWMEYG VEAEQDDEPV TISDFVVPFF  180
EQSGLREHDD ESAFFMVPKM YRSCSVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-1510651875Disease resistance protein RRS1
5w3x_D8e-1510651875Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG271400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804239.16e-70probable WRKY transcription factor 54
TrEMBLA0A3L6T6H23e-91A0A3L6T6H2_PANMI; Uncharacterized protein
STRINGPavir.Ba02750.1.p1e-128(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-16WRKY DNA-binding protein 54