PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG285800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 259aa    MW: 26759.7 Da    PI: 10.1702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG285800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17104153355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + GVr+++ +gr++AeIrd + ng  +r++lg+f++ae Aa a+++a+++ +g
  Pavir.2NG285800.1.p 104 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 153
                          57******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-30103167IPR001471AP2/ERF domain
PROSITE profilePS5103221.773103161IPR001471AP2/ERF domain
PfamPF008471.8E-12104153IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21104163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-27104162IPR001471AP2/ERF domain
CDDcd000185.93E-14104162No hitNo description
PRINTSPR003674.0E-8104115IPR001471AP2/ERF domain
PRINTSPR003674.0E-8127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
METKSTRAPP RFHPPRPRME HRPIHGFYLY SDYYAAGATS SSSSSSDSLP FGTGCGGDEV  60
PAPAVSGYGR RRADAAEVSA VPTAAEAGQV APDGSSKQQA AGAFIGVRRR PWGRFAAEIR  120
DSTRNGARVW LGTFDSAEAA AMAYDQAALS ARGPGAALNF PVERVQESLR ALALGGGGAG  180
GAAGSPVLAL KSRHSKRKRR NKSEIAAAAA AGANGAVAAS GRSRSRSAAA AAEQQRFVVE  240
LEDLGADYLE ELLRISES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-231021631374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG285800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277021e-114KJ727702.1 Zea mays clone pUT5641 AP2-EREBP transcription factor (EREB128) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803964.19e-77ethylene-responsive transcription factor ERF094-like
SwissprotA0A3Q7I5Y96e-39ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3L6T4H85e-83A0A3L6T4H8_PANMI; Uncharacterized protein
STRINGPavir.Ba02374.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-23ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]