PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG293300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 247aa    MW: 27515 Da    PI: 10.3042
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG293300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.8e-2175157190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHe 88 
                          ++Yn+YA +vGFs+rks+ k++  +++i ++++vCs +g++++e++k         +trtgC+a+++ + ++  +g+w v+k++l+HnH 
  Pavir.2NG293300.1.p  75 EMYNTYAGQVGFSIRKSQIKRR-IDKTISQKHMVCSSQGHQKNESSK--------GTTRTGCNARVQFSVSTsrEGVWTVQKVVLDHNHY 155
                          58***************98886.8889*************9998777........89********998777666***************9 PP

                 FAR1  89 la 90 
                          la
  Pavir.2NG293300.1.p 156 LA 157
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1775157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGNRGGEGEE RTQNKSITMG VDIVEANGDD NTLCYTIPEG MTDETPDQQV DDITRQNLII  60
PKVGMNFESE DKAYEMYNTY AGQVGFSIRK SQIKRRIDKT ISQKHMVCSS QGHQKNESSK  120
GTTRTGCNAR VQFSVSTSRE GVWTVQKVVL DHNHYLASPN KRHKLRSQRS VQEADRKLIA  180
KIREAGMKPS SEQALPFARP ARPHGTGGHL PSAAPPSRPA AQPRIARGRL LSLCRANHKN  240
WTSMVVF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG293300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971460.12e-73protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_012703729.18e-72protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9F8B11e-68B9F8B1_ORYSJ; Uncharacterized protein
STRINGSb04g005390.12e-72(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-18FAR1-related sequence 5