PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG307100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 240aa MW: 25685.5 Da PI: 4.3614

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG307100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36.9	1.1e-11	1	44	58	101
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 m++l+y++eara dPv G+v +i +lq+q+e+++ ela++k+++ Pavir.2NG307100.1.p 1 MRALIYQSEARAADPVGGCVTIIEQLQRQIERTELELAYVKQQI 44 899**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.7E-8	1	41	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.485	1	44	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRALIYQSEA RAADPVGGCV TIIEQLQRQI ERTELELAYV KQQIAFYRQA AAVDPLADPA 60 MILPPPDAAA AVAGQDHQDN AAAVAVGALY AGQEPVPPGA AGLVFQDQQG YHHHHVLKAD 120 QQNHPPPQQL YNYFCYDGTA ADESTQDGSV QQFGGFADTG GLKIGSPTLA TLGEQLEQQC 180 QLDAFDVKPP GLRATTERHG PADELMRPAE DHHDVDQHME EPATAVAAPC HLELGFSSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG307100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680048.1	3e-83	LOB domain-containing protein 6-like
TrEMBL	A0A2S3GZ98	1e-113	A0A2S3GZ98_9POAL; Uncharacterized protein
STRING	Pavir.Ba02946.1.p	1e-171	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-10	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Pavir.2NG307100.1.p