PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG313900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 249aa MW: 28549.1 Da PI: 6.9497

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG313900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.4	1.5e-10	97	144	41	90
FAR1 41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r ++k++ ++++ +r+etr+ C+ ++k++++ dg ++++++e eHnH la Pavir.2NG313900.1.p 97 RGPDKRE-DSSKYSRPETRCMCQNRMKISLK-DGFYYIYEFEPEHNHILA 144 4555555.78899****************.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-6	102	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDMSVPLLQQ VQSIITPPDT DAATSSSNFF RINTQSVDTE RIELESNYRK DSAQVENSVE 60 DNIPKIGMKF YYEQEVYDFY NFYARVKGFS IQRSSIRGPD KREDSSKYSR PETRCMCQNR 120 MKISLKDGFY YIYEFEPEHN HILATASQAH HLRYQRTITE AQLASVEAAK AVGISNKATF 180 DLMAKEAGGI DNLGFTREDM KNKLYSKRTL KINQADTGGV LEYLEKKTSN EEKFFYSIQA 240 ITRLLPTL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG313900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683537.1	4e-76	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1W0W5Z8	7e-95	A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J04444.1.p	1e-134	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-19	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG313900.1.p