PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG324700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 370aa MW: 41896.4 Da PI: 6.7811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG324700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.4	1.7e-11	117	216	24	90
FAR1 24 rngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkaklkvkkekdgkwevt 79 + k +fvC+keg+ ++ +++ k+r++++ ++t+Ckak++vk+ +kw+v+ Pavir.2NG324700.1.p 117 SYAQRQKVQFVCNKEGRGRKVSEEpaiaesddsnyeaqeaksepnnnngdaekrkkldGGKKRKREKMQHTDCKAKMVVKLI-ADKWHVI 205 445567899*****9999999999***********************99998889999999***********.9** PP FAR1 80 kleleHnHela 90 + l+HnH+l+ Pavir.2NG324700.1.p 206 YFALDHNHDLV 216 ******996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-10	114	216	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MKLAFRVVRS QFDEQSPSHQ SQNDVVATIL AGSNTQNANA CSVNNQEPSV VASVVVQDVE 60 KEGLADIVKD AVQDVEKEGL VDIVKDALQD EVWLTSPIPY TAKTFGTIKE ARGFYNSYAQ 120 RQKVQFVCNK EGRGRKVSEE PAIAESDDSN YEAQEAKSEP NNNNGDAEKR KKLDGGKKRK 180 REKMQHTDCK AKMVVKLIAD KWHVIYFALD HNHDLVIKPS LKKFLRSHKG IPKQEKDFIA 240 LLHGCNLSIG QIMQVMNEFY GSTQLVPYEA KDVSNFRSTI RRMEKYKDIQ EILDHFKALK 300 NEDSEFFYKL KLDIEHRVEC LFWKVLETNQ VRRVTCRCCP CGVEDVSPLY IGAESESDLV 360 EAQGTGNKE*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MKLAFRVVRS QFDEQSPSHQ SQNDVVATIL AGSNTQNANA CSVNNQEPSV VASVVVQDVE  60
KEGLADIVKD AVQDVEKEGL VDIVKDALQD EVWLTSPIPY TAKTFGTIKE ARGFYNSYAQ  120
RQKVQFVCNK EGRGRKVSEE PAIAESDDSN YEAQEAKSEP NNNNGDAEKR KKLDGGKKRK  180
REKMQHTDCK AKMVVKLIAD KWHVIYFALD HNHDLVIKPS LKKFLRSHKG IPKQEKDFIA  240
LLHGCNLSIG QIMQVMNEFY GSTQLVPYEA KDVSNFRSTI RRMEKYKDIQ EILDHFKALK  300
NEDSEFFYKL KLDIEHRVEC LFWKVLETNQ VRRVTCRCCP CGVEDVSPLY IGAESESDLV  360
EAQGTGNKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	183	KKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG324700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	4e-90	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2T7D5A3	1e-117	A0A2T7D5A3_9POAL; Uncharacterized protein
STRING	Pavir.Ba02159.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG324700.1.p