PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG334100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 424aa    MW: 44951.6 Da    PI: 9.7387
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG334100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29264323159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  Pavir.2NG334100.1.p 264 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSVLVATYEGEHNHP 323
                          58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-28261325IPR003657WRKY domain
SuperFamilySSF1182903.66E-25261325IPR003657WRKY domain
SMARTSM007741.5E-34264324IPR003657WRKY domain
PfamPF031062.7E-24265323IPR003657WRKY domain
PROSITE profilePS5081126.934266325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAGTSGLTTT ADPGGLWPGF SDSDRSARRA RRSAFSTQLR PAPAGSIPSR PPPICTTPSR  60
RRASNPSVLF LHRSCYRVLT PRRRLHDRLV RGGGRAQATM MLMDSARRTG CSPVCLDLSV  120
GLSPSPPKTG ATDPPAGGCG MESSMTDEQA RTLEAKFTQV SEENRRLAEK VAYLYASQIA  180
RPGPDSPGST RASQAASPPP PPAASRKRSR DSMDEPPNSG DADGSGRAEA AESTPSDALE  240
GSCRRIKVSR VCSRIDPSDT TLTVKDGYQW RKYGQKVTRD NPSPRAYFRC AFAPSCPVKK  300
KVQRSAEDSS VLVATYEGEH NHPCPTRAGE LPSCAARGGS VPCSISINSS GPTITLDLTK  360
NGAGGGVRVL KAAGAPDLKE LCQEIASAEF RTALVEQMAS SLTRDSKFTD TLAAAILKQL  420
PDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-182643251474WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRRLHDRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG334100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802072.10.0WRKY transcription factor WRKY76-like
SwissprotQ6IEK51e-133WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A3L6QW120.0A0A3L6QW12_PANMI; WRKY transcription factor 18-like
STRINGPavir.Ba01849.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-51WRKY DNA-binding protein 40