PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG338600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 151aa MW: 17512.2 Da PI: 9.8254

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG338600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82	1e-25	26	118	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fYn+YA GFsvrk++ + +++++e r++vCs++g+ree+ k + k+rr+r t++gC akl++ +++ +g+w+v+++ eHnH+ Pavir.2NG338600.1.p 26 QFYNTYALGKGFSVRKNYVEWNSEHTELNLRRYVCSRQGYREEKYVKkEIKKRRPRDITHVGCPAKLVIALDRnTGQWYVKNFIDEHNHP 115 6**************************************9997663678999*************999************** PP FAR1 89 lap 91 lap Pavir.2NG338600.1.p 116 LAP 118 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-24	26	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MADLESLLEY NKIVRKMFAN KDEGFQFYNT YALGKGFSVR KNYVEWNSEH TELNLRRYVC 60 SRQGYREEKY VKKEIKKRRP RDITHVGCPA KLVIALDRNT GQWYVKNFID EHNHPLAPAD 120 LGCLLRSHRK ISVAQKAEIV ELGVAGICKH *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG338600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021301886.1	9e-70	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3RQA3	1e-56	A0A0Q3RQA3_BRADI; Uncharacterized protein
STRING	Pavir.J35119.1.p	6e-90	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-21	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG338600.1.p