PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG347000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 501aa    MW: 52693.6 Da    PI: 9.1244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG347000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-066688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++Cg+ F r  nL+ H r+H
  Pavir.2NG347000.2.p 66 YVCEICGQGFQRDQNLQMHRRRH 88
                         9*********************9 PP
2zf-C2H211.60.00085145166223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C  C+k +  +s++k H++t+
  Pavir.2NG347000.2.p 145 ACARCSKAYAVHSDYKAHLKTC 166
                          6*******************98 PP
3zf-C2H210.70.0016174192523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr +++  H+ t+
  Pavir.2NG347000.2.p 174 DCGRVFSRVESFIEHQDTC 192
                          9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.73E-56588No hitNo description
SMARTSM003550.00326688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355110108138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.73E-5139164No hitNo description
SMARTSM00355230144171IPR015880Zinc finger, C2H2-like
SuperFamilySSF569541.44E-5322415No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MLGFCAPAAG SPPDDATPEP FCSLQIATTA AAAATTKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CGQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPSCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCTAGRARAG ASPACGGGGG GVGVAAASAG SRQQAPPPAL SLSRTASSTS  240
PSSDVVISPA AWPGPPLPSP TAAAFHGRFD RVPSPRTPPS EHHCGGRTHN LELQLMPPSC  300
SVAGGGGAPG MAAFRGAQSS PAVSSRGDAA AAIQLQLSIG VFGGGPGDAG ERGGEALVAA  360
ARARQEVEAR ELLRQAVAEK AAADEARAQA RRHAELAEQE LASAKRMRRQ AQVELSRAHA  420
LREHAVRQVN ATLLQITCLG CRHKFRARPA PPPDVACSYV SSVVTEGGDA EVDEPPPLDA  480
DGGGMRRRQH AMAMAMDIVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17140194357Zinc finger protein JACKDAW
5b3h_F7e-17140194357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKKRR
23641KKKRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.281861e-62root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG347000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803598.10.0protein indeterminate-domain 16-like
TrEMBLA0A3L6QUU40.0A0A3L6QUU4_PANMI; Protein indeterminate-domain 16-like
STRINGPavir.Ba02057.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-102indeterminate(ID)-domain 14