PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG350900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 449aa    MW: 48112.7 Da    PI: 9.7232
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG350900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57388.77.1e-28199296297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          +++rlws  De+v+L+Gl +++a++g    +++di ++   +++++s++v+ +q+++K+rrLK+K++   ++ak+g++p+f ++hd++++
  Pavir.2NG350900.1.p 199 RPSRLWSLADELVILRGLATYRARRGFlpGSMHDIAKLQGHIQSELSVQVTPTQVSDKVRRLKQKYNLLASRAKNGRDPDFPTPHDRSVY 288
                          679************************877888********************************************************* PP

               DUF573  90 elskkiWg 97 
                          el k++Wg
  Pavir.2NG350900.1.p 289 ELGKRVWG 296
                          *******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.8E-26201296IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAPKRPAAPA AAPSGSASEA SDAEADAPLH HPSSPSPSKA PPPPPNPNPN SSAAAPALVA  60
EDSAAAGSDS GAAYDSDANH RPALRKAGAA ASPSPSRKPR SPRPRSRSRS RSPDAASESD  120
GAASDADPAA GDGADSADDG NALPLPPPRT SRGEAAAIKP LSSRPMDPPR RLMVPSFTEP  180
RPKRPRSVAV PSSVEQLKRP SRLWSLADEL VILRGLATYR ARRGFLPGSM HDIAKLQGHI  240
QSELSVQVTP TQVSDKVRRL KQKYNLLASR AKNGRDPDFP TPHDRSVYEL GKRVWGPTNN  300
AAGDGYEIVG VGGGGGESEE EREIGESDED VESEGDERAR KNRRLKPIAM ANGNLTGFGP  360
VNANSRREFD FEKGKDAYPY LWETVEDLSK EHLNGVAFKK AFELIEGPKA RGMEEKLRKF  420
RLTEIRHQLR RMELMKETVK MVLDALEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RPRSRSRSR
2340346KNRRLKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158580.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG350900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804708.10.0STOREKEEPER protein-like
TrEMBLA0A3L6TCP40.0A0A3L6TCP4_PANMI; Uncharacterized protein
STRINGPavir.Ba02051.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-17DNA-binding storekeeper protein-related transcriptional regulator