PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG353100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 509aa    MW: 54638.1 Da    PI: 8.7184
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG353100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.48.7e-30101412127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                          p GfrF+P+++elv++yL ++++g++   + ++ e+++y ++P++L +  + +++++ewyf s+r++ y +g r+ r+ +  +g+Wka+ 
  Pavir.2NG353100.1.p  10 PIGFRFKPKEDELVDYYLLPRLQGRPAVPNGCVVEANVYACHPETLINehRGAGRQEEWYFVSPRARMYGNGVRPARKSRdgRGRWKAST 99 
                          89************************877789**************74224445778********************87745778****9 PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                           +kev +   ++ ++ +k +L +++g+ +k ++t+W+m e +
  Pavir.2NG353100.1.p 100 ATKEVAQVvvRNGVKFCKSVLNYFEGNPKKETRTKWIMLEIT 141
                          99999988778889************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-368169IPR003441NAC domain
PROSITE profilePS5100536.6659169IPR003441NAC domain
PfamPF023656.3E-1510140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEVGGEGQYP IGFRFKPKED ELVDYYLLPR LQGRPAVPNG CVVEANVYAC HPETLINEHR  60
GAGRQEEWYF VSPRARMYGN GVRPARKSRD GRGRWKASTA TKEVAQVVVR NGVKFCKSVL  120
NYFEGNPKKE TRTKWIMLEI TVPEYEVKLD RPGARNILDE YVMCKIYVSP QHKKKCEDDD  180
DDDEEGTGSA CEEEEACSST QHGQVTAEPN LSVKQAGKRP MVEQPPQRGR TAPARKQARR  240
GSPGIGSTQS SCSTSNAAAP TELYYGGGPG AHHHGLQLQA TATMQQRPAG AYSGRAPATP  300
PAGACGGRGH GQMPTLRPVV YQPFSDLTGH PLGQMEMAAA TRPPNPATRP QCSPGSQPPR  360
HPGTAFTFRP QVSLQCFYDQ NYRAVPQPPA YAYASHLQRQ AVPRGHGPSY SGHPYYQQRR  420
SLPPPAVGHG GAASAGNGAA RLSVNAEQYF VDLATINTSL AGGCTQRAAA PATLVESPAP  480
APAPAPTGVA EVETETGKTS GLNTQDAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-181016718163NO APICAL MERISTEM PROTEIN
1ut4_B5e-181016718163NO APICAL MERISTEM PROTEIN
1ut7_A5e-181016718163NO APICAL MERISTEM PROTEIN
1ut7_B5e-181016718163NO APICAL MERISTEM PROTEIN
4dul_A5e-181016718163NAC domain-containing protein 19
4dul_B5e-181016718163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG353100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801595.10.0NAC domain-containing protein 2-like
TrEMBLA0A2T7ET240.0A0A2T7ET24_9POAL; Uncharacterized protein
STRINGPavir.Ba02036.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-23NAC-like, activated by AP3/PI