PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG369000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 458aa    MW: 50810 Da    PI: 4.6237
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG369000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.81.9e-34241152102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g++
  Pavir.2NG369000.1.p  24 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHT 104
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.2NG369000.1.p 105 RLLKNIHRRKP 115
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3820113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6120113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3520113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3024113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEGSSGGAGG GGGSGSSSGS PPPFLIKTYE MVEDPATNHV VSWGPGGASF VVWNPPDFSR  60
DLLPKYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFI RGHTRLLKNI HRRKPVHSHS  120
LQNQVNGPLA EAERRELEDE INRLKYEKSL LLADLQRQNQ QQYGISWQMQ SLEDRLVQME  180
QRQRNIVASL CDILQRHRVA SASMLETDHF SKKRRVPKID FFVDEPTVEE QQVPFLQTLG  240
AEAPSMPPGH LLNAEPFEKM ELALVSLENF FQRASHGSAE EMYGAGAAAE PSPDLTLGEM  300
NSAPMDTSIN QQSSAGLSPF SSTTEQAHFP SSLADSVSYA PSPILTLSDI NEEAHRTAEV  360
DMNSETTTGD TSQETTSETE DMPAKVNDVF WERFLTGEAE SGRQHANNKS EATEAKEDIK  420
IAIDWSILNH QNNVDQITEK MGHLDSAENG SEATGND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-241011317129Heat shock factor protein 1
5d5v_B3e-241011317129Heat shock factor protein 1
5d5v_D3e-241011317129Heat shock factor protein 1
5hdg_A2e-24221138110Heat shock factor protein 1
5hdn_A2e-24221138110Heat shock factor protein 1
5hdn_B2e-24221138110Heat shock factor protein 1
5hdn_C2e-24221138110Heat shock factor protein 1
5hdn_D2e-24221138110Heat shock factor protein 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG369000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810280.10.0heat stress transcription factor A-4d-like
RefseqXP_025810281.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB51e-178HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A2T7EB590.0A0A2T7EB59_9POAL; Uncharacterized protein
STRINGPavir.Ca01519.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.17e-69heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]