PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG375200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 459aa    MW: 51099.7 Da    PI: 7.4994
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG375200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-11149192141
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                          e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Pavir.2NG375200.2.p 149 ERDTKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 192
                          78999**************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-8145197No hitNo description
SMARTSM003383.6E-7149214IPR004827Basic-leucine zipper domain
PfamPF001702.6E-8149192IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.071151193IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.41E-7153195No hitNo description
PROSITE patternPS000360156171IPR004827Basic-leucine zipper domain
PfamPF141442.0E-28249323IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MYLSVAHTSR SGKEASGAYD HLGELDQALF MYLDHGSGHG ATHQEQRQTL NIFPSQPMHV  60
EPSPKGEISL VLSPAPVGSK QPRSPDHHHH QQAAMEELAG SRRLQQEHHH LQHQPFPAAG  120
AEPAAGGMTK DVKPLANKKD HRRGTSTSER DTKTLRRLAQ NREAARKSRL RKKAYIQQLE  180
SSRIRLAQLE QELHTARAQG VFFPNSSLLA DQGVAGKGVP IGGIDGLSSE AAMFDVEYGR  240
WQEEHYRLMY ELRAALQQHL PEGELQMYVE SCLAHHDEMM GIKEGAIKGD VFHLISGVWR  300
SPAERCFLWL GGFRPSEVIK MLLSHVEPLT EQQIVGVYGL QQSALETEEA LSQGLDALYQ  360
SLSDTVVSDA LSCPSNVANY MGQMAAAINK LSTLEGFVRQ AESLRQQTLH RLHQILTTRQ  420
MARSLLAVSD YFHRLRTLSS LWVTRPRAPQ EQPQQGHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.269760.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG375200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800643.10.0transcription factor TGA2.1-like
SwissprotQ52MZ21e-171TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2S3H0U70.0A0A2S3H0U7_9POAL; Uncharacterized protein
TrEMBLA0A2T7ETY90.0A0A2T7ETY9_9POAL; Uncharacterized protein
STRINGGRMZM2G006578_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-145bZIP family protein