PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG379900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 578aa    MW: 61744.5 Da    PI: 6.7989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG379900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75.1e-33384442159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnh+
  Pavir.2NG379900.1.p 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHQ 442
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-37369444IPR003657WRKY domain
SuperFamilySSF1182906.28E-29376444IPR003657WRKY domain
PROSITE profilePS5081137.355379444IPR003657WRKY domain
SMARTSM007746.5E-38384443IPR003657WRKY domain
PfamPF031062.9E-25385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAGTGNHGSL MEEWFPPLTP SPRALMPNFL NEEFSSGPFS NLFSEHGTNK PHDQCEKSRE  60
LVSLSEEVPA QAVKDRFQKG FSLEPNLFSG TQKSNSHGGL AERRAARAGF SVPKIDTSRV  120
GSSAVIRSPV SIPPGLSPTT LLESPVFLYN KMAQPSPTTG TLPFLMATSD KSTIPPAAKI  180
TEDSTFDNDV FSFQPHLGSK QPSFSTAEMD YGVYHQNQSV SNIHQQESSL QSSFPAVKDN  240
INATIVKAKA SDSMFGYSHN SVDQKQDDET NQNAQGEGVE ARTAACLHVS THGDASLMGS  300
QDAVDVSSTL SNEEDERATH GTVSIECEGD EDETESKRRK LDASGTSTIA TAVATSAIEM  360
GAAASRAVRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THPGCSVRKH  420
VERASHDLKS VITTYEGKHN HQVPAARNSG QAGSSSANAP SASQGSSSHR RHEPAQASFA  480
HFGVSPPFGS FGHLGPATGN FRFGMVPPGM AIPMPSLGSL APTKMVGNSS AMRGYPGLMM  540
PAEPKAEPVS QPGFPTANAA PSAYQQMMSR PPFGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37375445878Probable WRKY transcription factor 4
2lex_A1e-37375445878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.419880.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG379900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802032.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLA0A3L6T8Q00.0A0A3L6T8Q0_PANMI; Putative WRKY transcription factor 2
STRINGPavir.J40119.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.17e-60WRKY DNA-binding protein 2