PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG391000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 611aa    MW: 68139.5 Da    PI: 5.9521
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG391000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3429.14.2e-131384181353
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          e+l +rmwkd+++l+r+ker+++l   ++a++++++ +++++qa rkkmsra DgiLkYMlk mevcna+GfvYgiip+kgkpv+gasd+
  Pavir.2NG391000.1.p  38 EDLARRMWKDRVRLRRIKERQQKLA-LQQAELEKSRPKQISDQALRKKMSRARDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGASDN 126
                          89*******************9865.66667*********************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          +raWWkekv+fd+ngpaai ky+++nl+++++++    + +++hsl++lqD+tlgSLLs+lmqhc+ppqr++plekg++pPWWP+Gke+w
  Pavir.2NG391000.1.p 127 IRAWWKEKVKFDKNGPAAIEKYESENLVSADAQGG---GIKNQHSLMDLQDATLGSLLSSLMQHCNPPQRKYPLEKGTPPPWWPSGKEEW 213
                          ******************************99999...88************************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX.... CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss.... 265
                          w +lgl+  q  ppykkphdlkk+wkv+vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l vl++ee++++++    s+    
  Pavir.2NG391000.1.p 214 WIALGLPSGQM-PPYKKPHDLKKVWKVGVLTGVIKHMSPNFDKIRNQVRKSKCLQDKMTAKESLIWLGVLQREERLVHRIDNGvSEithh 302
                          *******9999.9******************************************************************99996447677 PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.................................XXXXXXXXXXXXXXXXXXXX CS
                 EIN3 266 slrkqspkvtlsceqkedvegkkeskikhvqavktta.................................gfpvvrkrkkkpsesakvss 322
                          sl ++++  t+s+++++dv+  ++   ++++++++++                                 g +   krk     +a  ss
  Pavir.2NG391000.1.p 303 SLLEDRNGETISSGNEYDVDAFEDAPLSTSSKDDEQDlspvaqsaeehvpkrgreraynkrpsqivpskaGRTKPPKRK-----RARHSS 387
                          888899999***********66666668888888888899999999999999999999999999754444333333333.....444455 PP

                          X......XXXXXXX.XXXXXXXXXXXXXXXX CS
                 EIN3 323 kevsrtcqssqfrgsetelifadknsisqne 353
                          +++ r  qs     +++++ ++d+n+++q e
  Pavir.2NG391000.1.p 388 TGIERDVQSVDDAPENPRNLIPDMNQLDQVE 418
                          5666778999888899999999999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.4E-12538286No hitNo description
Gene3DG3DSA:1.10.3180.101.6E-69162293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.54E-60166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDQLAILATE LVDSSDFEVD GVPNLTENDV SDEEIEPEDL ARRMWKDRVR LRRIKERQQK  60
LALQQAELEK SRPKQISDQA LRKKMSRARD GILKYMLKLM EVCNARGFVY GIIPDKGKPV  120
SGASDNIRAW WKEKVKFDKN GPAAIEKYES ENLVSADAQG GGIKNQHSLM DLQDATLGSL  180
LSSLMQHCNP PQRKYPLEKG TPPPWWPSGK EEWWIALGLP SGQMPPYKKP HDLKKVWKVG  240
VLTGVIKHMS PNFDKIRNQV RKSKCLQDKM TAKESLIWLG VLQREERLVH RIDNGVSEIT  300
HHSLLEDRNG ETISSGNEYD VDAFEDAPLS TSSKDDEQDL SPVAQSAEEH VPKRGRERAY  360
NKRPSQIVPS KAGRTKPPKR KRARHSSTGI ERDVQSVDDA PENPRNLIPD MNQLDQVEIQ  420
GMATQIVSFN HGGTTNEALD HRGDNQVQVH LPGAEGNNFD GAPAANATPI SIYVGGQHLP  480
YQNSASARSR SENNFTVDAD PGLNNLPSSY HTLPPKQSLP LSMMDHHVVP MGVRSPTDNI  540
PYGDHILGGN STSVPGDMQQ LIDFPFYGEQ DKFVGSSFEG LPLDYISISS PIPDIDDLLH  600
DDDLMEYLGT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A9e-641662919134ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.262630.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG391000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800640.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_025800641.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_025800642.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-143EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A3L6QL820.0A0A3L6QL82_PANMI; ETHYLENE INSENSITIVE 3-like 3 protein
STRINGPavir.J14329.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-139ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]