PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG392700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 424aa    MW: 44406.4 Da    PI: 4.6774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG392700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34411312101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++iswse+g++fvv+ + efa ++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k
  Pavir.2NG392700.1.p  41 FLTKTYQLVDDPAVDDVISWSEDGSTFVVWRPAEFALDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEK 121
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Pavir.2NG392700.1.p 122 RLLCDIHRRK 131
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3731125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5837130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.43E-3438130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.1E-214164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-217991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-2192104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAEQGGATGE AGGSEPPTPA PAPAPPPAAE AAGQRSLPTP FLTKTYQLVD DPAVDDVISW  60
SEDGSTFVVW RPAEFALDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANDCFRRGE  120
KRLLCDIHRR KVPPAPAAPA AALATAAAAA ASGAVTVAAA PIPMVLPVTL PGSPALSSDE  180
QVLSSNSGSD HPQAVPSGSG GASASGDTGE ENERLRRENA RLTRELAQMK KLCNNILVLM  240
TKYASSQQLD ASAALSSVVN CSGESSETLP PPPPLPPAIL DLMPSCPGLA TAAAGLVADA  300
DPDQAARLFG VSIGQKRTRE DDDTGEEPAA DHGGSGAEVK TEASDPHQLP SGSSKEASPD  360
QHPWPIYRPT PVYHSMRPCN GPDQGAGSDQ DGSNSRESGC GWPAVFVPDD RGNEKSISWM  420
LFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-253113020129Heat shock factor protein 1
5d5v_B1e-253113020129Heat shock factor protein 1
5d5v_D1e-253113020129Heat shock factor protein 1
5hdg_A1e-254113010110Heat shock factor protein 1
5hdn_A1e-254113010110Heat shock factor protein 1
5hdn_B1e-254113010110Heat shock factor protein 1
5hdn_C1e-254113010110Heat shock factor protein 1
5hdn_D1e-254113010110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.168600.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG392700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0181990.0BT018199.1 Zea mays clone EL01N0559D07.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802933.10.0heat stress transcription factor B-2c-like
SwissprotQ652B01e-150HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A2T7EUW80.0A0A2T7EUW8_9POAL; Uncharacterized protein
STRINGPavir.Ba01265.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]