PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG397500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 257aa MW: 26454.5 Da PI: 8.582

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG397500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.3e-38	41	98	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fC++CrryWtkGG+lrnvPvGgg+rk+ +ss Pavir.2NG397500.1.p 41 GDPCPRCESRDTKFCYYNNYNTSQPRHFCRSCRRYWTKGGSLRNVPVGGGTRKSSSSS 98 568**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.63	42	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	43	96	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-19	44	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MQEPGRRPAP PFAGVDLRRP KGYPPAPTAA EAEDPAPAPA GDPCPRCESR DTKFCYYNNY 60 NTSQPRHFCR SCRRYWTKGG SLRNVPVGGG TRKSSSSSSP VPPSPAAAPR STKRSKESKR 120 RRVAPAPDPA PGTDAFAAAI TGVANTAPTP APETVAAGEK PAAPVPAATV AAKEKPAATV 180 AATEMPTAPP AAVSGFTDTS TAPGVRLADV GSDADGGKEP LPDPNHFEWP SGCDLGPYWG 240 TGVFADTDPA LFLNLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	122	KRRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.2209	1e-171	callus

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG397500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087500	2e-93	BT087500.1 Zea mays full-length cDNA clone ZM_BFb0096C05 mRNA, complete cds.
GenBank	EU966429	2e-93	EU966429.1 Zea mays clone 294453 mRNA sequence.
GenBank	JX428529	2e-93	JX428529.1 Zea mays subsp. mays clone pUT3129 DOF16 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957110.1	1e-108	dof zinc finger protein MNB1A
Refseq	XP_025802654.1	1e-108	dof zinc finger protein MNB1A-like
TrEMBL	A0A1E5V289	1e-118	A0A1E5V289_9POAL; Dof zinc finger protein MNB1A
STRING	Pavir.Ba01771.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-22	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pavir.2NG397500.1.p