PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG399100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 181aa    MW: 20252.7 Da    PI: 7.6145
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG399100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.51.1e-1181137359
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          + +r rr+ +NRe+ArrsR RK+ ++ eL   v  L +  ++L +el++    ++ +
  Pavir.2NG399100.1.p  81 DERRRRRMVSNRESARRSRMRKQRQLTELWAQVVHLRGTSRRLLDELNHAMRDCSDM 137
                          5679999******************************************99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-777160No hitNo description
SMARTSM003381.0E-1379143IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.81881133IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.09E-1083133No hitNo description
PfamPF001704.1E-983137IPR004827Basic-leucine zipper domain
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
CDDcd147027.60E-1388135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLHQHHYHGE VAMANLHCLT SPNPAFHAHC HSNMIAMPPT PFQLPPSTFE PTHEAPAVGN  60
SPAGSGSADD ACGGRMVMAE DERRRRRMVS NRESARRSRM RKQRQLTELW AQVVHLRGTS  120
RRLLDELNHA MRDCSDMCCE NARLEKEKAE LSAKLERLMQ AQNNTTPSSS SEPRDDTATE  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG399100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799413.11e-114bZIP transcription factor 2-like
TrEMBLA0A2T7ETI31e-114A0A2T7ETI3_9POAL; Uncharacterized protein
STRINGPavir.Ba01782.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-07basic leucine-zipper 42