PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG407700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 367aa    MW: 39589.8 Da    PI: 9.265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG407700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806e-56231531128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Pavir.2NG407700.1.p  23 LPPGFRFHPTDEELITYYLRQKIADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDK 111
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++     + elvg+kktLvfykgrap+gekt+Wvmheyrl
  Pavir.2NG407700.1.p 112 EIYTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 153
                          ***9766666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-6420174IPR003441NAC domain
PROSITE profilePS5100561.18723174IPR003441NAC domain
PfamPF023652.1E-2924153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEGSAAAAGG GVAGGGSKKE ESLPPGFRFH PTDEELITYY LRQKIADGSF TARAIAEVDL  60
NKCEPWDLPE KAKLGEKEWY FFSLRDRKYP TGVRTNRATN AGYWKTTGKD KEIYTGQLPA  120
TPELVGMKKT LVFYKGRAPR GEKTNWVMHE YRLHSKSTPK SNKDEWVVCR VFAKSAGAKK  180
YPSNNAHSRS HHHPYTLDMV PPLLPTLLQH DPFARGPHYP YMTPADLAEL ARFARGTPGL  240
HPHIQPHPGT AAAYINPAAV APPFTLSGGL SLNIGASPAM PSPPLHGMSM AMSHQQIGPS  300
GAGTAGNHHQ VMASDHQQQM APAGLGGCVI GPGADAGFGA DAAGARYQSL DVEQLVERYW  360
PAGYQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-572218016171NO APICAL MERISTEM PROTEIN
1ut4_B6e-572218016171NO APICAL MERISTEM PROTEIN
1ut7_A6e-572218016171NO APICAL MERISTEM PROTEIN
1ut7_B6e-572218016171NO APICAL MERISTEM PROTEIN
3swm_A9e-572218019174NAC domain-containing protein 19
3swm_B9e-572218019174NAC domain-containing protein 19
3swm_C9e-572218019174NAC domain-containing protein 19
3swm_D9e-572218019174NAC domain-containing protein 19
3swp_A9e-572218019174NAC domain-containing protein 19
3swp_B9e-572218019174NAC domain-containing protein 19
3swp_C9e-572218019174NAC domain-containing protein 19
3swp_D9e-572218019174NAC domain-containing protein 19
4dul_A6e-572218016171NAC domain-containing protein 19
4dul_B6e-572218016171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.110730.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG407700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803276.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ24e-84NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3L6QN810.0A0A3L6QN81_PANMI; Uncharacterized protein
STRINGPavir.Ba01665.1.p0.0(Panicum virgatum)
STRINGPavir.J02772.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-92NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]