PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG415600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 246aa    MW: 27721 Da    PI: 4.9176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG415600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.5e-5561341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgk
  Pavir.2NG415600.1.p   6 LPPGFRFHPTDEELVNYYLKRKIHGFKIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGK 94 
                          79****************************.99**************85335566888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++vl+++g+ +g+kktLv+y+grap+g++tdWvmheyrl
  Pavir.2NG415600.1.p  95 DRRVLHHGGRPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 134
                          **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-644158IPR003441NAC domain
PROSITE profilePS5100560.2156157IPR003441NAC domain
PfamPF023651.4E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG FKIELDIIPE VDLYKCEPWE LADKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVLH HGGRPIGMKK TLVYYRGRAP  120
QGVRTDWVMH EYRLDDKDAE DTLPIQDTYA LCRVFKKNAI CTEVDDLQAQ CSMALLEGAC  180
QQLLTSGSQE YQTPSPDVPV GSTSGGADDD ADKDESWMQF ISDDAWCSST ADGAEESTSC  240
VALAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-52115912167NO APICAL MERISTEM PROTEIN
1ut4_B1e-52115912167NO APICAL MERISTEM PROTEIN
1ut7_A1e-52115912167NO APICAL MERISTEM PROTEIN
1ut7_B1e-52115912167NO APICAL MERISTEM PROTEIN
3swm_A1e-52115915170NAC domain-containing protein 19
3swm_B1e-52115915170NAC domain-containing protein 19
3swm_C1e-52115915170NAC domain-containing protein 19
3swm_D1e-52115915170NAC domain-containing protein 19
3swp_A1e-52115915170NAC domain-containing protein 19
3swp_B1e-52115915170NAC domain-containing protein 19
3swp_C1e-52115915170NAC domain-containing protein 19
3swp_D1e-52115915170NAC domain-containing protein 19
4dul_A1e-52115912167NAC domain-containing protein 19
4dul_B1e-52115912167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG415600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280590.0KJ728059.1 Zea mays clone pUT6205 NAC transcription factor (NAC121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957582.10.0NAC domain-containing protein 86
SwissprotQ9FFI52e-82NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A3L6T4V40.0A0A3L6T4V4_PANMI; Uncharacterized protein
TrEMBLK4A2I70.0K4A2I7_SETIT; Uncharacterized protein
STRINGPavir.Ba01384.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-116NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]