PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG424500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 257aa    MW: 28127.6 Da    PI: 10.7632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG424500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1211.1e-37111401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelvv+yL++kv +++l++  vi+ v d+ +++PwdLp    a+e e yfFs r+  ++ +g r++r + sgyWk+tgk
  Pavir.2NG424500.1.p  11 LPPGFRFHPTDEELVVQYLRRKVLARPLPA-AVIPVVhDVARLDPWDLPG---ASEGEGYFFSLRRAPATgRGGRRRR-AGSGYWKTTGK 95 
                          79****************************.8899998***********3...3566889999988766525666666.599******** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          +++v+ +    ++ lvg+k+ L+f++   ++++++t Wvmheyrl
  Pavir.2NG424500.1.p  96 ETPVFLHyggrRQLLVGVKTALTFHRSePSSSSSRTGWVMHEYRL 140
                          *****9987656666**********772456678*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-458174IPR003441NAC domain
PROSITE profilePS5100544.29911174IPR003441NAC domain
PfamPF023651.3E-2412140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MERPAQAPRQ LPPGFRFHPT DEELVVQYLR RKVLARPLPA AVIPVVHDVA RLDPWDLPGA  60
SEGEGYFFSL RRAPATGRGG RRRRAGSGYW KTTGKETPVF LHYGGRRQLL VGVKTALTFH  120
RSEPSSSSSR TGWVMHEYRL AVPGDLAMAE QRKNANHGRV AEPGEWVVCR VSLKNRPRSR  180
PNRDGDGKTP GNRTSIAQGA APLQHREGDG RQPPSLLMSP QPSSSSCVTG VTDISDQDEV  240
SSISVRDAPA DSQREA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-281117417165NO APICAL MERISTEM PROTEIN
1ut4_B6e-281117417165NO APICAL MERISTEM PROTEIN
1ut7_A6e-281117417165NO APICAL MERISTEM PROTEIN
1ut7_B6e-281117417165NO APICAL MERISTEM PROTEIN
3swm_A5e-281117420168NAC domain-containing protein 19
3swm_B5e-281117420168NAC domain-containing protein 19
3swm_C5e-281117420168NAC domain-containing protein 19
3swm_D5e-281117420168NAC domain-containing protein 19
3swp_A5e-281117420168NAC domain-containing protein 19
3swp_B5e-281117420168NAC domain-containing protein 19
3swp_C5e-281117420168NAC domain-containing protein 19
3swp_D5e-281117420168NAC domain-containing protein 19
4dul_A6e-281117417165NAC domain-containing protein 19
4dul_B6e-281117417165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG424500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0625331e-136BT062533.1 Zea mays full-length cDNA clone ZM_BFb0310M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800656.11e-141NAC domain-containing protein 83-like
TrEMBLA0A2T7EUG81e-140A0A2T7EUG8_9POAL; Uncharacterized protein
STRINGPavir.J11699.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-42NAC domain containing protein 41