PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG425900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 322aa    MW: 33746.1 Da    PI: 10.2394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG425900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15136182255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp   gk +r++lg++     Aa+a++aa+++l+g
  Pavir.2NG425900.1.p 136 HYRGVRRRR-WGKWAAEIRDP---GKAARVWLGTYAE---AARAYDAAARRLKG 182
                          69****777.**********8...545******9977...************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-13135190No hitNo description
SuperFamilySSF541717.19E-18136192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-26136190IPR001471AP2/ERF domain
PfamPF008477.5E-10136182IPR001471AP2/ERF domain
SMARTSM003801.4E-27136196IPR001471AP2/ERF domain
PROSITE profilePS5103219.902136190IPR001471AP2/ERF domain
PRINTSPR003673.0E-12137148IPR001471AP2/ERF domain
PRINTSPR003673.0E-12172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGIAIRSTEV PRWCVAAGEG PREATESLRS IQVQAGAARP GGMHGERGAV APRRGEERAA  60
GPGGSLGHSC YYSAARAQYD VAVVAAALTR VVCATDPMAT PPRGAEAAAA SATPPAPRRG  120
GDGGAGAEAE PPRAQHYRGV RRRRWGKWAA EIRDPGKAAR VWLGTYAEAA RAYDAAARRL  180
KGPRAKLNFP FSTTTPSRPH HHEAAATARL LPAESPPAPP SPGFAAAEDV EFPGLWQHAR  240
ILQSRSHAAV ASGPPPPVDG HARHGMGIGS SSTCSHTHIH VPCFVQGRTT LKAWKGAMNQ  300
VISTSWCTAP ECPELCMRDK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16133195268ATERF1
3gcc_A1e-16133195268ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132143RAQHYRGVRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG425900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957315.11e-48ethylene-responsive transcription factor 4
TrEMBLA0A1E5V4L23e-49A0A1E5V4L2_9POAL; Uncharacterized protein
STRINGPavir.Ba01557.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-16related to AP2 6l