PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG431300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 424aa    MW: 44216.4 Da    PI: 4.9575
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG431300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35421332102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k
  Pavir.2NG431300.1.p  42 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEK 122
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.2NG431300.1.p 123 RLLCDIHRRKV 133
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3832126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5938131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.03E-3539131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.9E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-204265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2093105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAEQGGATGE AGGGSEPPAL APAPAPPPAA EAAGQRSLPT PFLTKTYQLV DDPAVDDVIS  60
WNEDGSTFVV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG  120
EKRLLCDIHR RKVAPVPAAP AAALATAAAA AASGAVTVAA APIPMALPVP LPGSPALSSD  180
EQVLSSNSGS DHPQAAPSGS GGASASGDTG EENERLRREN ARLTRELAQM KKLCNNILLL  240
MTKYASSQQL DASAALSSVV NCSGESSEAV PPPPPLPPAI LDLMPSCPGL ATAAAGLVAD  300
ADPDQAARLF GVSIGLKRAR EDDGDTGEEE EPAGHGGSGA EVKTEEASDP RQHPSGSSKE  360
PSPDQHPWPI YRPTPVHPSM RPSCNGPDQG AGSDQDGSNS RCFLCIKSAV VRIHELLAVP  420
RQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-263213120129Heat shock factor protein 1
5d5v_B6e-263213120129Heat shock factor protein 1
5d5v_D6e-263213120129Heat shock factor protein 1
5hdg_A5e-264213110110Heat shock factor protein 1
5hdn_A5e-264213110110Heat shock factor protein 1
5hdn_B5e-264213110110Heat shock factor protein 1
5hdn_C5e-264213110110Heat shock factor protein 1
5hdn_D5e-264213110110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.168600.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG431300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957414.10.0heat stress transcription factor B-2c isoform X2
SwissprotQ652B01e-151HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A368Q4220.0A0A368Q422_SETIT; Uncharacterized protein
STRINGPavir.J03297.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-59HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]