PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG434400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 168aa    MW: 18939.7 Da    PI: 10.0124
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG434400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.1e-1725108291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          fY++YA  vGF ++k++++ +      t ++f+C  egk++++ k+  +++++++++r gCka++  ++ +  g+   t++  eHnH+l+
  Pavir.2NG434400.1.p  25 FYKKYAGCVGFPIKKNRKRGT------TGKDFCCLLEGKHNTKVKD-GDRKTSKTSKRDGCKAMVCAREARgGGRVFFTRIAFEHNHKLN 107
                          9************99876655......679**************99.999999****************9999***************97 PP

                 FAR1  91 p 91 
                          p
  Pavir.2NG434400.1.p 108 P 108
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1325108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
GDDLDHEVVP NFEMSFESFE DAFLFYKKYA GCVGFPIKKN RKRGTTGKDF CCLLEGKHNT  60
KVKDGDRKTS KTSKRDGCKA MVCAREARGG GRVFFTRIAF EHNHKLNPTP SMTKRMRAHK  120
VEDPSVMNLI DTMHASQVPH PNVMRVLRSV AGGVENLHLT ERDVQNR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG434400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ba01117.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-13FAR1-related sequence 5