PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG447600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 185aa    MW: 18540.5 Da    PI: 8.4958
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG447600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702105.87.1e-33110549153
               DUF702  49 rrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsi 138
                          rrerqqqla ++++aaa++a a + r+ +++ +++ ++++ ++ss+++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsi
  Pavir.2NG447600.1.p   1 RRERQQQLAVLAASAAATTAGAGPSRDPTKRPRARLSVATPTTSSGDQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSI 90 
                          8**********9999999988888888888899999****************************************************** PP

               DUF702 139 gGhvfkGiLydqGle 153
                          gGhvfkGiL+d G++
  Pavir.2NG447600.1.p  91 GGHVFKGILHDVGPH 105
                          *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-291105IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.2E-2356104IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
RRERQQQLAV LAASAAATTA GAGPSRDPTK RPRARLSVAT PTTSSGDQQM VTVAERFPRE  60
VSSEAVFRCV RLGPVDQAEA EVAYQTTVSI GGHVFKGILH DVGPHSLGTP GGSGGAIEYH  120
FRHAGDGSPP STAGAGDVGG GGGGGGGAAN VIVSSAVVMD PYPTPGPYGA FPAGAAFYHG  180
HPRQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.80010.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG447600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803795.12e-94protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3L6T6Z83e-93A0A3L6T6Z8_PANMI; Protein SHI RELATED SEQUENCE 1-like
TrEMBLK4A0T28e-94K4A0T2_SETIT; Uncharacterized protein
STRINGPavir.J34076.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-19Lateral root primordium (LRP) protein-related