PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG448500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 224aa    MW: 22861.6 Da    PI: 9.6693
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG448500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70296.94e-30451934154
               DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvk..stWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 
                          g ++C+dC   ak +Cah+RCR CC  rgf C  hv+  s   pa+  +er+q++ aa + +a++ a +   ++++   + +++ s++++
  Pavir.2NG448500.1.p  45 GIIRCRDCWLLAKAGCAHRRCRHCCGGRGFACPAHVRpsSSSGPASPCSERHQRALAAPAASASTVAVEIRCNPHKRPRAPAATPSTSSV 134
                          5689********************************966777899999999777777666666666655555555543333444444443 PP

               DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              +    + +   + v  +avfr+vr++    + +e+aY+++v+igG vf+GiLyd G+ +
  Pavir.2NG448500.1.p 135 DDP-TAAAAPGRFARDGVCLDAVFRRVRLGP---DGAEVAYHATVTIGGRVFRGILYDVGPRS 193
                          333.33344444445679**********986...5689**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.2E-3547192IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016245.5E-12154191IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MHPDSDAASF LSTATSADGS LERQRQLVRG AASSSPPPRG TLAGGIIRCR DCWLLAKAGC  60
AHRRCRHCCG GRGFACPAHV RPSSSSGPAS PCSERHQRAL AAPAASASTV AVEIRCNPHK  120
RPRAPAATPS TSSVDDPTAA AAPGRFARDG VCLDAVFRRV RLGPDGAEVA YHATVTIGGR  180
VFRGILYDVG PRSSSTASTD TGGSSEGSSR STAGGGLDLT LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG448500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801651.16e-97protein SHORT INTERNODES-like
TrEMBLA0A3L6T9401e-104A0A3L6T940_PANMI; Uncharacterized protein
STRINGPavir.Ba01243.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2105377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-07Lateral root primordium (LRP) protein-related