PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG467900.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 375aa MW: 40628.9 Da PI: 7.1029

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG467900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	85	127	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k++rr+++NReAAr+sR RKka+i eLe ++L + ++L Pavir.2NG467900.3.p 85 DQKVQRRLAQNREAARKSRMRKKAYIVELESSRAKLAQLEQEL 127 679***************************9888887766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-7	83	162	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.519	85	129	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-7	86	127	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.7E-9	87	131	No hit	No description
SuperFamily	SSF57959	2.19E-7	87	130	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.9E-28	170	245	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAPPGMASAA DDGRFCLPWA AAHFENWGDS GGIVVTSPLT ETTCTDADDA SGDRQPAQMG 60 GGAITQSVAA YMDSCAASKE GSCRDQKVQR RLAQNREAAR KSRMRKKAYI VELESSRAKL 120 AQLEQELQRA RQQGMFIASG RTGDHGGSTG GASAAFDLEY ARWLDEHQRH MTDLRVALGA 180 QLGDDDLRVL VDGAMLHYEQ LFRLKGAATR ADVFHVLSGM WVSPAERFFM WLGGFRSSEL 240 LAVLARQVEP LTEQQLVGLC SLRQSSQQAE DALSQGIEAL QQALADTLAA AGASAAGAAA 300 DGVTNYMGQM AVAMGKLATV ENFLRQADLL RQQTLQQMRR ILTTRQAARA LLVVSDYFSR 360 LRALSSLWLT RPRD*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAPPGMASAA DDGRFCLPWA AAHFENWGDS GGIVVTSPLT ETTCTDADDA SGDRQPAQMG  60
GGAITQSVAA YMDSCAASKE GSCRDQKVQR RLAQNREAAR KSRMRKKAYI VELESSRAKL  120
AQLEQELQRA RQQGMFIASG RTGDHGGSTG GASAAFDLEY ARWLDEHQRH MTDLRVALGA  180
QLGDDDLRVL VDGAMLHYEQ LFRLKGAATR ADVFHVLSGM WVSPAERFFM WLGGFRSSEL  240
LAVLARQVEP LTEQQLVGLC SLRQSSQQAE DALSQGIEAL QQALADTLAA AGASAAGAAA  300
DGVTNYMGQM AVAMGKLATV ENFLRQADLL RQQTLQQMRR ILTTRQAARA LLVVSDYFSR  360
LRALSSLWLT RPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG467900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085145	0.0	BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBank	KJ727560	0.0	KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812128.1	0.0	transcription factor TGAL3-like
Swissprot	Q5Z6N9	1e-171	TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBL	A0A2T7E1F9	0.0	A0A2T7E1F9_9POAL; Uncharacterized protein
STRING	Pavir.J20659.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	3e-90	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG467900.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]