PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG471800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 334aa MW: 35997.5 Da PI: 8.4467

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG471800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.1	9.7e-13	23	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkr.tse 74 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + + Pavir.2NG471800.1.p 23 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaddaaaagkppGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPAA 112 5********************************9999999*****98888889**************9987666653677 PP trihelix 75 ssstcpyfdqle 86 + ++++f +++ Pavir.2NG471800.1.p 113 AGPSWRFFARMD 124 8889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-14	21	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDGLPDADAA PLAAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWVDIAREV 60 SAHCADDAAA AGKPPGGGNS AKTPNQCKNK IESMKKRYRA ESAAVARAGP AAAGPSWRFF 120 ARMDGLLKGP AVCSGQVQQS DLSNSIDLRA PAKAEAEVEA DFVAQLTDAG PGAFSDLMNI 180 DTNGAAPEKA EKVGNSVQKE SRAADSDANV SSPRSKVANE DVEEVDRVSD RPKKRKSTEF 240 DIAKSIELLA SSYLKIEHAR MDMYRETERM RVEAEIKKGE MELKRTEIMA KTHLQIAKLF 300 AKRLKEGRGK TGGSSSVTAE VDTHTKKGEN GSG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4873	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG471800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	1e-102	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	1e-102	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	1e-102	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	1e-102	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	1e-102	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2S3H213	0.0	A0A2S3H213_9POAL; Uncharacterized protein
STRING	Pavir.Ba01421.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-44	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pavir.2NG471800.1.p