PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG475600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 541aa    MW: 62340 Da    PI: 8.4903
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG475600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.31.2e-081271675090
                 FAR1  50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           +++++a++rt C+a+++ + ++++ w v+k++ +HnH la
  Pavir.2NG475600.1.p 127 MTSKENATKRTCCDARIQFSVSREEIWTVQKIVFDHNHYLA 167
                          56899*********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-6127167IPR004330FAR1 DNA binding domain
PfamPF105516.1E-16253311IPR018289MULE transposase domain
PROSITE profilePS509669.866460498IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-4472494IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4473500IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVEPDTLQSA AAAEIAVQSV SPLRASSAPG NELVTGASTV SEVMEMLTNS TMQAPEVFEA  60
IAPQDPPTDQ VGSNHGGSAI VPHVGMSFKS ENDAYQIYNA YARRISFSIR KSTTRLKPDG  120
TVYQKHMTSK ENATKRTCCD ARIQFSVSRE EIWTVQKIVF DHNHYLASPN KVNKLRSQRR  180
IKEADKQLIS QIREAGIQPA KVYEFFKQWY GGVENVPFTL MDCNNMIGRE RRNQFFWADG  240
QAIMDYACFG DAVSFDTTFQ TNKFEMPFAP LLGTNHHKQT IIFGAALLYN ETIESFVWLF  300
NTFLTAMSEF KRCVYQESSV AYFDELWHEL LNKYKLEKNS WLSSLYALRA HWAAIFRMNN  360
VFKKRFRRKL CLYELIEECE KCTASLRENE LDADYKSRST NPIIYMPHLA MLKTAAQSYT  420
RNLYSDFEEQ FKEQFSFSCK LFQSEGATNT YKVTPTKYQD EAIIIFNSED LTIKCSCRKY  480
ECIGILCKHA IRVLTINEVF ILPTQYILNR WTKYAKRGFY CEKRKLNDNE TSKAHFKRSS  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG475600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126197e-73CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658611.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_008658616.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLQ75G830.0Q75G83_ORYSJ; Putative transposase
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-72FAR1-related sequence 5