PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG476100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 262aa MW: 27080.2 Da PI: 5.0801

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG476100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.7	4.3e-23	172	216	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Pavir.2NG476100.1.p 172 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 216 69************************************9998875 PP
2	QLQ	54.3	4e-19	106	141	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Pavir.2NG476100.1.p 106 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 141 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	105	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.1E-12	106	140	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.922	106	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.471	172	216	IPR014977	WRC domain
Pfam	PF08879	9.9E-20	173	211	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAAEGEAKNP SGGGGGGGGG GGVDNPQVEV APSAAAPAEG EAVVAAAQGT GQGPEGEKAD 60 REGEKDDGAC RDLVLVEDPE EAAATAALQE EMKALVASIP GGAGAAFTAM QLQELEQQSR 120 VYQYMAARVP VPTHLVFPIW KSVTGASSEG AQKYPTLMGL ATLCLDFGKN PEPEPGRCRR 180 TDGKKWRCWR STIPNEKYCE RHMHRGRKRP VQLVVEDDEP DSASGSKTTA GKATEGAKKA 240 DDKSPSNKKL AVAAPAAVQS I*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20687	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in shoots (Ref.1, PubMed:24854713). Expressed in developing leaves (Ref.1, PubMed:24854713). {ECO:0000269\|PubMed:24854713, ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG476100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042513	0.0	BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds.
GenBank	BT087437	0.0	BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds.
GenBank	EF515849	0.0	EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds.
GenBank	EU960601	0.0	EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds.
GenBank	KJ726874	0.0	KJ726874.1 Zea mays clone pUT3415 GRF transcription factor (GRF3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800926.1	1e-168	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-148	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A2S3H2A3	1e-167	A0A2S3H2A3_9POAL; Uncharacterized protein
STRING	Pavir.Ba01449.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-30	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG476100.1.p

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]