PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG479800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 225aa    MW: 24040.4 Da    PI: 8.2784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG479800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.7e-09142182954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Pavir.2NG479800.2.p 142 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 182
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-15134204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-14137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6143182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-6155187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNTMLQLEQL TKLDGGHESL MAPVSPPVSP VQTHAAHCFS PPPHVSATAA ATGYYPDQGT  60
PPAAYAGSIG LEHLQVDYVL SPCADTAARP AGSPSPTSSA DAMREVIFHI AALQPVEIEP  120
EAVRPPKRRN VRISKDPQSV AARLRRERIS ERIRTLQRLV PGGTKMDTAS MLDEAIHYVK  180
FLKSQVQSLE RAAAAATHRA AALGAAFHPA LHAPWQYAVP HGDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RPPKRR
2142147RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG479800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803362.11e-116transcription factor HEC2-like
TrEMBLA0A2T7ET291e-120A0A2T7ET29_9POAL; Uncharacterized protein
STRINGPavir.Ba02034.1.p1e-162(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-41bHLH family protein