PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG490000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 915aa    MW: 102606 Da    PI: 8.5821
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG490000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.32.1e-51331474117
                 CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          e  +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++ee+p
  Pavir.2NG490000.1.p  33 EaGTRWFRPNEIYAVLANHARFKVHAQPIDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEEDP 122
                          4379************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                          +f rrcywlL++ele+ivlvhy+++
  Pavir.2NG490000.1.p 123 NFFRRCYWLLDKELERIVLVHYRQT 147
                          **********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.70227153IPR005559CG-1 DNA-binding domain
SMARTSM010766.0E-6130148IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812969.38E-11381467IPR014756Immunoglobulin E-set
SuperFamilySSF484035.29E-19514670IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-19516672IPR020683Ankyrin repeat-containing domain
CDDcd002049.92E-17558666No hitNo description
PROSITE profilePS5029718.404574678IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-8580670IPR020683Ankyrin repeat-containing domain
SMARTSM002486.3E-6607636IPR002110Ankyrin repeat
PROSITE profilePS5008811.808607639IPR002110Ankyrin repeat
SMARTSM00248520646675IPR002110Ankyrin repeat
SuperFamilySSF525402.42E-9755823IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24772794IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334773802IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057775793IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019795817IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.53796820IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-4797817IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249878906IPR000048IQ motif, EF-hand binding site
PfamPF006120.12879898IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MAGGAGARDP LVASEIHGFL TCADLNFDKL MAEAGTRWFR PNEIYAVLAN HARFKVHAQP  60
IDKPASGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGEE  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPPSHIEA EVAEVPPINV IHYTSPLTST  180
DSASARTELS SCAAAAAAPE EINSHGGRAI SCETDDHDSS LESFWADLLE SSMKNDTSVR  240
GGSLTPNQQT NYGMRDSGNN ILNTNATSNA ILYSPANVVS EAYAANPGLN QVSESYYGAL  300
KHQVNQSPSL STSDLDSQSK PHANSIMKTP VDSNMPSDVP ARQNSLGLWK SLDDDITCLV  360
NNPSSAIPIT RPVIDEKPFH IIEISSEWAY CTDDTKVLVV GYFLDNYKHL AGANLYCVIG  420
EQCVTADIVQ TGVYRFMARP HVPGRVNLYL TLDGKTPISE VLSFEYRIMP GSSDDDEPKR  480
SKLQMQMRLA RLLFSTSQKK IPPKFLVEGS RVSNLLSASA EKEWMDLFKY VIDSKGTNIP  540
ATESLLELVL RNKLQEWLVE KIIEGHKSTD RDDLGQGPIH LCSFLGYTWA IRLFSLSGFS  600
LDFRDSSGWT ALHWAAYYGR EKMVAALLSA GANPSLVTDP THDDPGGHTA ADLAARQGFD  660
GLAAYLAEKG LTAHFEAMSL SKDKRSTSRT QSIKQISKEY ENLTEQELCL RESLAAYRNA  720
ADAANNIQAA LRERTLKLQT KAIELANPEI EAATIVAAMR IQHAFRNYNR KKMMRAAARI  780
QSHFRTWQMR RNFMNMRRQA IKIQAAYRGH QVRRQYRKVI WSVGVVEKAI LRWRKKRKGL  840
RGIATGMPVA MSTDTEAAST AEEDYYQVGR QQAEDRFNRS VVRVQALFRS HRAQQEYRRM  900
KVAHEEAKVE FSQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92970.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG490000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800750.10.0calmodulin-binding transcription activator CBT isoform X1
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A3L6QU260.0A0A3L6QU26_PANMI; Calmodulin-binding transcription activator 6-like
STRINGPavir.Ba00948.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators