PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG506100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 307aa MW: 31671.9 Da PI: 12.5657

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG506100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.4e-39	42	101	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ Pavir.2NG506100.1.p 42 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 101 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	44	99	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-21	45	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAGAGGATAV QQPAAGAPPA GARSGAGAGA GAAGAPVADP RAEALRCPRC DSANTKFCYY 60 NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRS RSSSAAGRRR EERILLRRGR 120 RHVLLGGVHA APAAAGGVPA VAHVRARPAR GHLAGVAATR QRHRRRPPRP LPGGHAVGCL 180 LGGNRLRDAA AADTGGPPAG PRLRGRRRRR ADPAAQAVDA RGRGGRGWDH GQLLRAAALQ 240 LPRAGAGGAA RQGGGRRRRG PPAEGGARGP AERQLGAADA VAVQRRRKHH RVGRAHGGGR 300 VHEPRG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG506100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582403	0.0	KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	3e-27	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG506100.1.p