PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG510800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 783aa    MW: 89373.9 Da    PI: 6.6837
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG510800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96e-2254140290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++  HnH+la
  Pavir.2NG510800.1.p  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGQWTVIRFVPVHNHQLA 140
                          7********************9*******************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-2054140IPR004330FAR1 DNA binding domain
PfamPF105511.8E-33262355IPR018289MULE transposase domain
PROSITE profilePS509669.334543579IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-5547576IPR007527Zinc finger, SWIM-type
SMARTSM005759.6E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MDSSQDFQEE RHQRRENGEE TEKAADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGQWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG AIVPSTSTES HPINGFSDMI  180
EGGTPESSGY TIRECYNQVG IQGVTVIEAG DGQNLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK CRNDYDCFGD AIIFDTTYRT NKYNLICAPF VGVDHHWQNV VFGCAFLLDE  300
SVASYAWVFK SFLESMGGQS PKSIFTDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL  360
GSLNTSQAFQ TLFTKCMQGS DSEEDFEESW TAMLREYKLQ DNSWLIDLHR FRHKWCSAFN  420
KDTFDGGINS SQWGEVSNNI LSGISDENTS LTRFALLLEK VVKDLRRNES EEDFRCSQTA  480
PVRAVKHSTV LKQTAESYTH RIYKLFEAEF LDGCGATSCH ETSSGGNLLR FEITMQGRGS  540
KVWAVALDTS TMEITCACRK FERMGLLCSH ALKVFTLQNV DTIPEKYVLQ RWTKDARRSM  600
YKLTQDDSTQ QECTEAELAY HNRAMQYAYN LIIKSQELEE SRKIFWDSLE TGEKALEVFF  660
EMRSMRSQAA KDASNKEKKK RKPTKGPSSK KAKQAPAASS TDLELSVQTN EHQYQSSQDA  720
QGNATIGRPY YYQQAFPTSP IQPNQMYMHP NMHTMPLCTP QDHLSAYAAV RSNSNFAGAK  780
NI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1677682KKKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.236910.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG510800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801015.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X3
TrEMBLA0A2T8KRX90.0A0A2T8KRX9_9POAL; Uncharacterized protein
STRINGPavir.Ba00843.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5