PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG529800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 374aa    MW: 39905.6 Da    PI: 7.2678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG529800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13308353655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Pavir.2NG529800.1.p 308 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 353
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16305364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-12306357No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16307365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MHGSPVSKDL NLPVQPPMAS SGLLRYRSAP SSVLGELCED FLSAGARAAS PDAGADNVFA  60
RFLADHHIRD DKPAPAPAPA TGHFASEADM ASQQQQMMFH SQHQHQEMVD AKSGLYRTVS  120
SGTETASAAA AGVGSSNLTR QSSSPAGFLD HLNMENGYGA MLRAGMSMGF RDGSSAATAE  180
SLAGGGSRLK GQLSFSSRQG SLMSQISEMD SEEVGGSSPE AAGAGRGYIP RYAMGSGWEE  240
SSSFMSENLS GMKRPRDSLE PEQNGLAQQF SLPKTSSEMA SIEKFLQFQD AVPCKIRAKR  300
GCATHPRSIA ERVRRTKISE RIRKLQELVP NMDKQTNTSD MLDLAVDYIK DLQKQVKVLK  360
ESNANCTCSA SKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34050.0callus| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG529800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H3450.0A0A2S3H345_9POAL; Uncharacterized protein
STRINGPavir.Ba00676.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-62bHLH family protein