PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG548700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 165aa MW: 17513 Da PI: 7.3126

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG548700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.1	7e-41	15	161	7	168
YABBY 7 seqvCyvqCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +e++ vqCnfC til+v vP l +k+v+v+CG C +lsv+l a + +++ +++ ++ ++ +++++ + Pavir.2NG548700.1.p 15 PERLGCVQCNFCATILLVGVPCGGLqLKTVAVQCGSCGGILSVTLPPAPPAAYSVEL------PPQEPGADPPPRDSDESSGEDRETAA- 97 799999**************987479***********99988766666553......33333333333332222222222222. PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 e++ p v++PPe++qr Psayn+fikeei+rika++P+i+h+eafsaa+knWah+P+i Pavir.2NG548700.1.p 98 ------AVAENHAF---PAVMKPPERKQRTPSAYNCFIKEEIRRIKATDPNITHKEAFSAASKNWAHLPRIQQ 161 ......22334444...4699***********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.4E-43	15	160	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-8	105	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.5E-5	109	160	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MASAARHPCF GGLLPERLGC VQCNFCATIL LVGVPCGGLQ LKTVAVQCGS CGGILSVTLP 60 PAPPAAYSVE LPPQEPGADP PPRDSDESSG EDRETAAAVA ENHAFPAVMK PPERKQRTPS 120 AYNCFIKEEI RRIKATDPNI THKEAFSAAS KNWAHLPRIQ QKEN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269\|PubMed:17216490}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG548700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801746.1	1e-107	protein YABBY 7-like
Swissprot	A2PZN8	1e-61	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A2S3H3E8	1e-107	A0A2S3H3E8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EXL6	1e-107	A0A2T7EXL6_9POAL; Uncharacterized protein
STRING	Pavir.Ba00601.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-34	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG548700.1.p