PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG559100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 228aa    MW: 23798.5 Da    PI: 9.512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG559100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-202676256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Pavir.2NG559100.1.p 26 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 76
                         589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-282684IPR001471AP2/ERF domain
CDDcd000183.62E-272684No hitNo description
PROSITE profilePS5103220.4152683IPR001471AP2/ERF domain
SMARTSM003801.3E-322689IPR001471AP2/ERF domain
PfamPF008477.8E-152676IPR001471AP2/ERF domain
PRINTSPR003673.1E-82738IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-202784IPR016177DNA-binding domain
PRINTSPR003673.1E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAQEGVRTA AAAAAATAAA ACRERRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE  60
EAARAYDEAA RALRGESTRT NFADRARRCG GVGAGRARLS KSLQHVMARA AAAGRATACA  120
GPGEQFALAA VFRHWQQPSA PQQAEAAAAA TKHAVQPSFV VPRRTEAPPS SPALGAGDPW  180
GDAAEVMMRA EETSFRVSSS VIVPPSFSAS SESESESLGV EDFLATS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1526921481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG559100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801648.14e-86ethylene-responsive transcription factor ERF055-like
TrEMBLA0A3L6TDV65e-99A0A3L6TDV6_PANMI; Dehydration-responsive element-binding protein 2E-like
STRINGPavir.Ba01277.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11