PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG560500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 635aa    MW: 68012.7 Da    PI: 6.5447
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG560500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.79e-32229286260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g Hnh+k
  Pavir.2NG560500.1.p 229 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGIHNHPK 286
                          8****************************************.***************85 PP
2WRKY36.21.2e-11402424123
                          ---SS-EEEEEEE--TT-SS-EE CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                          ldDgy+WrKYGqK+vkg+++pr+
  Pavir.2NG560500.1.p 402 LDDGYRWRKYGQKVVKGNPNPRH 424
                          59********************6 PP
3WRKY57.72.3e-184464832259
                          EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          rsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Pavir.2NG560500.1.p 446 RSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 483
                          9************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27219287IPR003657WRKY domain
PROSITE profilePS5081123.25223287IPR003657WRKY domain
SuperFamilySSF1182908.89E-25227287IPR003657WRKY domain
SMARTSM007744.5E-35228286IPR003657WRKY domain
PfamPF031064.5E-24229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-36387485IPR003657WRKY domain
SuperFamilySSF1182901.57E-9394424IPR003657WRKY domain
PROSITE profilePS5081131.709397485IPR003657WRKY domain
SMARTSM007747.9E-37402484IPR003657WRKY domain
PfamPF031064.0E-7403424IPR003657WRKY domain
SuperFamilySSF1182901.7E-14445485IPR003657WRKY domain
PfamPF031062.1E-13446483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGSGGSP EKPVLADRRV AALAGAGAGA RYKAMSPARL PISREPCLTI  60
PAGFSPGALL DSPVLLNNFK VEPSPTTGTL SMAAIINKST HLDILPSPRD RSAGSGHEDG  120
DSRDFEFKPH LSCQPAGPAV NDPNHHDTSM QNHTSSSSNL MTENKSLYSR ESIHQTANIS  180
SVPNQPVAIV GPSDNMPADV GTSEMNQMNS SENAAQETQT ENVAEKSAED GYNWRKYGQK  240
HVKGSENPRS YYKCTHPNCE VKKLLERSLD GQITEVVYKG IHNHPKPQPN RRLSAGAVPS  300
SQGEERYDGA APVEDKPSNI YPNLCNQVHS AGMIEPVPGP ASGDDGDGGG GRPYPGDDAN  360
EDDDLDSKRR KMESAGIDAA LMGKPNREPR VVVQTVSEVD ILDDGYRWRK YGQKVVKGNP  420
NPRHVALNLM LVFDAYSSQT LMALIRSYYK CTHTGCPVRK HVERASHDPK SVITTYEGKH  480
NHEVPASRNA SHEMSAAPMK PAVHPINSSM PGLGGMMRAC DGRAFTNQYS QAAESDTISL  540
DLGVGISLNH SDATNQMHPS VPEPMQYQMQ HMAPVYGSMG FPGMPVPTVP GNAASNVYGS  600
REEKANEGFT FKATPLDRSA NLCYSSAGNL VMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-31229486878Probable WRKY transcription factor 4
2lex_A2e-31229486878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.62460.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG560500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
GenBankKJ7278610.0KJ727861.1 Zea mays clone pUT5953 WRKY transcription factor (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801894.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A3L6QQW00.0A0A3L6QQW0_PANMI; WRKY transcription factor SUSIBA2-like
STRINGSi029245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-113WRKY family protein