PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG560500.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 563aa    MW: 60930.6 Da    PI: 6.3579
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG560500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.6e-32180237260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g Hnh+k
  Pavir.2NG560500.3.p 180 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGIHNHPK 237
                          8****************************************.***************85 PP
2WRKY107.66.2e-34353411159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Pavir.2NG560500.3.p 353 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 411
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27170238IPR003657WRKY domain
PROSITE profilePS5081123.25174238IPR003657WRKY domain
SuperFamilySSF1182907.45E-25178238IPR003657WRKY domain
SMARTSM007744.5E-35179237IPR003657WRKY domain
PfamPF031063.9E-24180236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-38338413IPR003657WRKY domain
SuperFamilySSF1182905.23E-30345413IPR003657WRKY domain
PROSITE profilePS5081138.297348413IPR003657WRKY domain
SMARTSM007746.5E-40353412IPR003657WRKY domain
PfamPF031061.2E-26354411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MLLWFLDICL SAVSGFSFFL LTTQSLKQPS LVEPSPTTGT LSMAAIINKS THLDILPSPR  60
DRSAGSGHED GDSRDFEFKP HLSCQPAGPA VNDPNHHDTS MQNHTSSSSN LMTENKSLYS  120
RESIHQTANI SSVPNQPVAI VGPSDNMPAD VGTSEMNQMN SSENAAQETQ TENVAEKSAE  180
DGYNWRKYGQ KHVKGSENPR SYYKCTHPNC EVKKLLERSL DGQITEVVYK GIHNHPKPQP  240
NRRLSAGAVP SSQGEERYDG AAPVEDKPSN IYPNLCNQVH SAGMIEPVPG PASGDDGDGG  300
GGRPYPGDDA NEDDDLDSKR RKMESAGIDA ALMGKPNREP RVVVQTVSEV DILDDGYRWR  360
KYGQKVVKGN PNPRSYYKCT HTGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPASRNASH  420
EMSAAPMKPA VHPINSSMPG LGGMMRACDG RAFTNQYSQA AESDTISLDL GVGISLNHSD  480
ATNQMHPSVP EPMQYQMQHM APVYGSMGFP GMPVPTVPGN AASNVYGSRE EKANEGFTFK  540
ATPLDRSANL CYSSAGNLVM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36180414878Probable WRKY transcription factor 4
2lex_A3e-36180414878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.62461e-173callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG560500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801894.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2T7EXX00.0A0A2T7EXX0_9POAL; Uncharacterized protein
STRINGPavir.Ba00563.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-103WRKY family protein