PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG570000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 244aa MW: 24336.5 Da PI: 9.1981

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG570000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++++ L H +H Pavir.2NG570000.1.p 93 YECSVCGKVYPSYQALGGHKTSH 115 99**********99998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.022	93	115	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.3E-14	93	117	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.785	93	120	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.22E-8	93	115	No hit	No description
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.22E-8	150	177	No hit	No description
Pfam	PF13912	7.9E-12	154	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.43	155	177	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.224	155	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSLAMSLDAG LDVSSKPPVP PPSPPRVDSW ARGGRRSKRR AGSPSGGGGA EQSEEEYLVL 60 SLLMLSRGVR GDAGDGGGVV AAAKGAAKAG QGYECSVCGK VYPSYQALGG HKTSHRKPPT 120 PTPTPAPQPA AAAAPAGDEA APLGGGVAHA EEKVHQCSLC LRTFPSGQAL GGHKRLHYEG 180 GGAAGADGIK ADKTKASAAQ ATSVLRDFDL NLAAAAAAAA TTAVDAESAL PEAKRVRMML 240 LVV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG570000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243238	0.0	AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802618.1	2e-85	zinc finger protein 36-like
TrEMBL	A0A3L6T8Z9	2e-93	A0A3L6T8Z9_PANMI; Zinc finger protein 1-like
STRING	Pavir.J16973.1.p	8e-91	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10028	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	3e-25	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG570000.1.p