PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG570300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 218aa MW: 22329.6 Da PI: 8.1558

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG570300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91	1.4e-28	9	110	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C +C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe er+++++sl+yeA r+ +Pv+Gavg++ ++++ Pavir.2NG570300.1.p 9 SCHGCRVLRKGCSEACVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPERPAVFQSLLYEAAGRTINPVSGAVGLLGAGSW 98 6*******************9999888899****************************************************** PP DUF260 86 qleqlkaelall 97 +l+q+++e++l+ Pavir.2NG570300.1.p 99 HLCQAAVETVLR 110 ****998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.409	8	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-24	9	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MRGGAPAMSC HGCRVLRKGC SEACVLRPCL QWIEGAEAQG HATVFVAKFF GRAGLMSFLT 60 AVPEPERPAV FQSLLYEAAG RTINPVSGAV GLLGAGSWHL CQAAVETVLR GGGIRPLPEL 120 DGGLPVADGR DPRALTARRA VAGCSTFSAA KRAVARAPVA AHAFPEPSCD LGLCLSPGSP 180 PAPGERRPGT PSMTSEESVT TTSGGGGREP ELLNLFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9731	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG570300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243238	0.0	AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802506.1	1e-133	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2S3H3R5	1e-132	A0A2S3H3R5_9POAL; Uncharacterized protein
STRING	Pavir.Ba01055.1.p	1e-152	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-65	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Pavir.2NG570300.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]