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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2NG570600.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 456aa MW: 49276.2 Da PI: 5.5491 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG570600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 307.2 | 3.8e-94 | 61 | 452 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsev 87
++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL ar +r ++ + +a+++ +s ++++++a++l f+++
Pavir.2NG570600.1.p 61 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDL 150
79***************************************************943444555555444444444777777777789**** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeel 172
+P+++f++ +aN aIleaveg vH++ ++ ++++Q p+L++ LasR+egpp lR+T+ + ++++ ++ e+g +L +fA++
Pavir.2NG570600.1.p 151 TPWHRFGYTAANAAILEAVEGFPVVHVVELGTTHCMQIPTLIDMLASRAEGPPILRLTVAHVAAPSapppaLDMSYDELGAKLINFARSR 240
***********************************************************999888888987778899************* PP
GRAS 173 gvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhn 249
+++++f+v+ ++ +++l++++L ++ Eal+Vn+++ lh+++de++ + s r+ +Lk +++l P++vvvve++ad +
Pavir.2NG570600.1.p 241 NMSMDFRVVttspadaFTSLVDQLRVQQLVLDGTEALVVNCHMLLHTVPDETAGSVSlaqpvsLRTMLLKSLRTLDPNLVVVVEEDADFT 330
*********666655445556677888888888****************998777666657767999*********************** PP
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
+++ + r+ a+++ + +d++++ l++ se+r+++E+e +g++++nv+a+eg +r+er+e ++W +r+++aGF++v+++e+aa ++k+
Pavir.2NG570600.1.p 331 AGDVVGRLRAAFNFLWIPYDAVDTFLSKGSEQRRWYEAE-IGWKVENVLAQEGVDRVERQEDRARWDQRMRSAGFRAVAFGEEAAGEVKA 419
***************************************.************************************************** PP
GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+l++++ g+ ++ e++ lvl+Wk++++v++SaW
Pavir.2NG570600.1.p 420 MLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 452
******.889999********************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MMQFTHTAPP PPPLHPNGHG GLGLGLFLDV GAPRARPWPG SFPTPASKIS LGNLNSTSCM 60
EQLLVHCANA IEANDATLTQ QILWVLNNIA PPDGDSNQRL TAAFLCALVA RASRTGACKA 120
VTAAVAAAVE SAALHVHRFT AVELASFVDL TPWHRFGYTA ANAAILEAVE GFPVVHVVEL 180
GTTHCMQIPT LIDMLASRAE GPPILRLTVA HVAAPSAPPP ALDMSYDELG AKLINFARSR 240
NMSMDFRVVT TSPADAFTSL VDQLRVQQLV LDGTEALVVN CHMLLHTVPD ETAGSVSLAQ 300
PVSLRTMLLK SLRTLDPNLV VVVEEDADFT AGDVVGRLRA AFNFLWIPYD AVDTFLSKGS 360
EQRRWYEAEI GWKVENVLAQ EGVDRVERQE DRARWDQRMR SAGFRAVAFG EEAAGEVKAM 420
LNEHAAGWGM KREDDDLVLT WKGHNVVFAS AWAPS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
