PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG571000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 203aa    MW: 20484.1 Da    PI: 9.3649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG571000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195173123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++Cp Cgk F +   L  H  +H
  Pavir.2NG571000.1.p 51 FRCPLCGKAFASYQALGGHKASH 73
                         89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-125075IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-75173No hitNo description
SMARTSM003550.0115173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4715173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-7109136No hitNo description
PfamPF139122.5E-8113136IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806114141IPR007087Zinc finger, C2H2
SMARTSM003553.7114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDQDEYLSLC LMALAAACQQ AGATATRRPH GVAAPSSSAA ATPPAELPLH FRCPLCGKAF  60
ASYQALGGHK ASHRKTPVAA GGGASYGAAA PLFHQKEATA EASSASGSGG AGRHVCTVCR  120
RGFETGQALG GHKRFHYLHG PSVSASLPTA AGSGAVGGFD LNLVPLVPEI GSAGVRRRGE  180
DDEVQSPLPL PPKKPRRPSN SA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG571000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801760.14e-88zinc finger protein 36-like
TrEMBLA0A2T7EY461e-93A0A2T7EY46_9POAL; Uncharacterized protein
STRINGPavir.Ba01050.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-19salt tolerance zinc finger