PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG583300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 293aa    MW: 31777 Da    PI: 8.6658
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG583300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.51.1e-33153209158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  Pavir.2NG583300.1.p 153 EEPIYVNAKQYHAILRRRQTRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 209
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-38151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.992152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-28154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-25155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-25186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MPKLLREVED HPVHPMSKSN HGFLSGNGHE MKHLGHKIHD KDSSSESGQS HQEAPAVSES  60
SLNENTSTQS DNDEGHGKHN QDTEHSVLSM GKQGSAFLPP KLDYNPSFAC LPYTADAYYG  120
GVLPGYPPHA IVHPQQNHTT NAPVMLPVEA AEEEPIYVNA KQYHAILRRR QTRAKLEAQN  180
KLVKGRKPYL HESRHRHAMK RARGSGGRFL NTKQLQEQSQ QHQASGGSSS SKFIGNSISS  240
QSDPTPTPST PASSDTASAS RVNQDHNCFP SVGFRPAMNF SAPGGDGAKL VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-23153214263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193202RHRHAMKRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.65220.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG583300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800585.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800586.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800587.10.0nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800588.10.0nuclear transcription factor Y subunit A-4-like isoform X1
SwissprotQ9LNP61e-39NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A2T7EYF80.0A0A2T7EYF8_9POAL; Uncharacterized protein
STRINGPavir.Ba00442.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-38nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]