PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG588000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 325aa    MW: 36105.7 Da    PI: 4.7756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG588000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18100149255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  Pavir.2NG588000.1.p 100 QYRGIRRRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAARAYDVEALRIRG 149
                          59*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-37100163IPR001471AP2/ERF domain
CDDcd000182.86E-31100159No hitNo description
SuperFamilySSF541712.48E-22100158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-32100158IPR001471AP2/ERF domain
PROSITE profilePS5103224.961100157IPR001471AP2/ERF domain
PRINTSPR003671.3E-11101112IPR001471AP2/ERF domain
PfamPF008472.0E-11101149IPR001471AP2/ERF domain
PRINTSPR003671.3E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MCGGAILSDL YSPVRRTVTA GDLWGESGSS KNVKNWKRSS WKFDEGDEDF EADFKDFEDC  60
SSEEEVDFGH EEKEFQLNSS NFVEFNGHTA KVTSRKRKIQ YRGIRRRPWG KWAAEIRDPQ  120
KGVRVWLGTF STAEEAARAY DVEALRIRGK KAKMNFPTTI TAAGKHHRQR VARPAKKTSQ  180
ESLKSSNASG HVISAGSSTD GTVVKIELSQ SPASPLPVSS AWLDAFELKQ LGGETPEADG  240
RETPEETDHE TGVTADMFFG NGEVRLSDDF ASYEPYPNFM QLPYLEGDSY ENIDTLFNGE  300
AAQDGVNIGG LWNFDDVPMD RGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21100162568ATERF1
3gcc_A4e-21100162568ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.103320.0callus| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG588000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801024.10.0ethylene-responsive transcription factor ERF073-like
RefseqXP_025801025.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2S3H3X90.0A0A2S3H3X9_9POAL; Uncharacterized protein
STRINGPavir.Ba00410.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.32e-37ERF family protein